md

Run MD simulations using OpenMM.

Modules:

• anneal –

  Perform annealing of the temperature and/or global context parameters.

• config –

  Common configuration models.

• constants –

  Constant values such as common force groups and names.

• hremd –

  Perform Hamiltonian replica exchange sampling.

• reporting –

  Reporters for state and statistics

• rest –

  Prepare a system for REST sampling.

• restraints –

  Create OpenMM restraint forces.

• simulate –

  Run OpenMM simulations.

• solvate –

  Solvate protein ligand systems

• system –

  Utilities for preparing and modifying OpenMM systems.

• tests –
• utils –

  Common utilities.